Software Stack

The following is a list of supplemental packages currently installed on the cluster.

CSEM:

• rrdtool - to build ganglia (?)
• perl-net-snmp - needed by rrdtool (?)
• perl-crypt-des - needed by perl-net-snmp (?)

GENERAL

• Intel compilers (C/C++, F90) v.9

DESC:

• R (merlise)
• snow (merlise)
• Rmpi (needed for snow)
• lam-csem (needed for Rmpi)
• rsprng (merlise)
• sprng (merlise)
• GSL (ricky)

COMPEB

• matlabR14 (compeb) (jbp1)
• java (needed for matlab)

CHEM

• scalapack (wychem) (shke)
• NAMD (in local directory)
• Charmm (requested)
• Amber (requested)

CML

• PETSc (ekim)

BIO

• mrbayes (frank)
• raxml (frank)
• paup (frank)
• phyml (frank)
• python (vers. 2.4)

STAT

• blitz++-csem (stat)
• lapack++-csem (stat)
• fftw (needed by SciPy)
  
• F2PY (need by SciPy)
• SciPy_core (needed by SciPy)
• sciPY
  

CBCB

• octave 2.1.72/73